Selaginella Genomics
Home
News
Wiki
Data
BLAST
Participants
Preferences
Feedback
Choose program to use and database to search:
Program (Query vs Database)
blastp (prot. vs prot.)
blastn (DNA vs DNA)
blastx (transl. DNA vs prot.)
tblastn (prot. vs transl. DNA)
tblastx (transl. DNA vs transl. DNA)
Database
----- Protein databases -----
Rice Proteins (TIGR release 5 - 01/24/2007)
Physcomitrella proteins (JGI v1.1 - March 2007)
Selaginella proteins (JGI v1.0 - March 2007 (released 10/31))
All Plants(P+T+Ubq) Proteins (Purdue - 28 Jan 2008)
Arabidopsis proteins (TAIR release 8 - 2008-05-16)
Viridiplantae proteins (All viridiplantae proteins - 01/16/2009)
Plant Protein (Combined plant protein database - 2009-03-13)
----- DNA databases -----
Rice Genes (TIGR release 5 - 01/24/2007)
Selaginella 12X coverage (Purdue assembly - 06/11/2006)
Selaginella Contigs (DOE/JGI Assembly - 05/05/06)
Selaginella Contigs (Purdue Assembly - 01/02/2006)
Selaginella Contigs (Purdue Assembly - 28/12/2005)
Selaginella Contigs (Purdue Assembly - 24/05/2005)
Best Selaginella assembly (JGI v1.0 - March 2007 (released 10/31))
All Plants(P+T+Ubq) DNA (Purdue - 28 Jan 2008)
Arabidopsis Coding Sequences - CDS (TAIR release 8 - 2008-05-16)
Arabidopsis Genes (TAIR release 8 - 2008-05-16)
Perform ungapped alignment
The query sequence is
filtered for low complexity regions by default.
Enter here your input data as a sequence in FASTA format
These items are needed only for formatting:
Expect Cutoff
1e-100
1e-50
1e-25
1e-20
1e-15
1e-10
1e-5
1
10
100
1000
Descriptions
0
10
50
100
250
500
1000
Alignments
0
10
20
50
100
250
500
This search performed courtesy of the
Purdue University Computational Genomics Facility
.
The
National Center for Biotechnology Information
provided the BLAST 2.2.15 software used in this search
Please send questions or comments to
compbio at purdue.edu
Last updated $Date: 2008/01/04 19:09:35 $ by $Author: gribskov $
